Tools

Here’s an overview of all the tools available right now; more info is available on the page for each tool:

GWAS Catalog SNP Search
Search for known or new ASM near GWAS hits for your phenotype of interest. Alternatively, search for the GWAS hits near ASM.

ASM SNP Search
Search for ASM or sites that you can interrogate within an area of interest or near to some SNP or gene.

Count SNP’s
Get quick counts of how many ASM’s are on an area of a chromosome, or of how many interrogable SNP sites you can interrogate in a region of the chromosome.

Sequence Viewer
View any section of the human reference genome. Visually check that a SNP site can be interrogated, or is a candidate ASM.

Generate Methylation Plots
Investigate correlation between genotype and methylation data. Does change in genotype at the specified SNP site affect methylation of nearby sites? This tool runs on the webserver.

Remote Methylation Plots
Investigate correlation between genotype and methylation data. Does change in genotype at the specified SNP site(s) affect methylation of any other site along the chromosome we have data for? This tool runs on a cluster.